HTSanalyzeR2

This package provides gene set over-representation, gene set enrichment analysis and enriched subnetwork analyses. 🚀


-Image Citation

Tutorials

Porvide 3 case study for reference

This case study uses HTSanalyzeR2 to perform gene set over-representation analysis, enrichment analysis and enriched subnetwork analyses on a common gene expression profile.

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This case study uses a time series CRISPR genome-wide drop-out data as a demonstration to perform time series analysis.

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In case if you only have a list of genes and want to do hypergeometric test with gene sets having known functions

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Resources

Contains the preprocessing, Hypergeometrics, Enrichment Subnetwork

Preprocessing

a preprocess step including invalid input data removing, duplication removing, initial gene identifiers converting to Entrez ID and phenotype ordering.

Contact us

Please contact to Correcting error and/or Giving advices. Thanks!

  • linqi23-c@my.cityu.edu.hk
  • Dr.Xin Wang's Lab.
    Room 315, Block 2, To Yuen Building, City University of Hong Kong, Hong Kong
  • 10:00 to 17:00 on workdays
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